Reference

Distance Functions

distance()

Distances and Similarities between Probability Density Functions

dist_many_many()

Distances and Similarities between Many Probability Density Functions

dist_one_many()

Distances and Similarities between One and Many Probability Density Functions

dist_one_one()

Distances and Similarities between Two Probability Density Functions

getDistMethods()

Get method names for distance

dist.diversity()

Distance Diversity between Probability Density Functions

estimate.probability()

Estimate Probability Vectors From Count Vectors

Information Theory

H()

Shannon's Entropy \(H(X)\)

JE()

Shannon's Joint-Entropy \(H(X,Y)\)

CE()

Shannon's Conditional-Entropy \(H(X | Y)\)

MI()

Shannon's Mutual Information \(I(X,Y)\)

KL()

Kullback-Leibler Divergence

JSD()

Jensen-Shannon Divergence

gJSD()

Generalized Jensen-Shannon Divergence

Low Level Distance functions

additive_symm_chi_sq()

Additive symmetric chi-squared distance (lowlevel function)

avg()

AVG distance (lowlevel function)

bhattacharyya()

Bhattacharyya distance (lowlevel function)

canberra()

Canberra distance (lowlevel function)

chebyshev()

Chebyshev distance (lowlevel function)

clark_sq()

Clark squared distance (lowlevel function)

cosine_dist()

Cosine distance (lowlevel function)

czekanowski()

Czekanowski distance (lowlevel function)

dice_dist()

Dice distance (lowlevel function)

divergence_sq()

Divergence squared distance (lowlevel function)

euclidean()

Euclidean distance (lowlevel function)

fidelity()

Fidelity distance (lowlevel function)

gower()

Gower distance (lowlevel function)

harmonic_mean_dist()

Harmonic mean distance (lowlevel function)

hellinger()

Hellinger distance (lowlevel function)

inner_product()

Inner product distance (lowlevel function)

intersection_dist()

Intersection distance (lowlevel function)

jaccard()

Jaccard distance (lowlevel function)

jeffreys()

Jeffreys distance (lowlevel function)

jensen_difference()

Jensen difference (lowlevel function)

jensen_shannon()

Jensen-Shannon distance (lowlevel function)

k_divergence()

K-Divergence (lowlevel function)

kulczynski_d()

Kulczynski_d distance (lowlevel function)

kullback_leibler_distance()

kullback-Leibler distance (lowlevel function)

kumar_hassebrook()

Kumar hassebrook distance (lowlevel function)

kumar_johnson()

Kumar-Johnson distance (lowlevel function)

lorentzian()

Lorentzian distance (lowlevel function)

manhattan()

Manhattan distance (lowlevel function)

matusita()

Matusita distance (lowlevel function)

minkowski()

Minkowski distance (lowlevel function)

motyka()

Motyka distance (lowlevel function)

neyman_chi_sq()

Neyman chi-squared distance (lowlevel function)

pearson_chi_sq()

Pearson chi-squared distance (lowlevel function)

prob_symm_chi_sq()

Probability symmetric chi-squared distance (lowlevel function)

ruzicka()

Ruzicka distance (lowlevel function)

soergel()

Soergel distance (lowlevel function)

sorensen()

Sorensen distance (lowlevel function)

squared_chi_sq()

Squared chi-squared distance (lowlevel function)

squared_chord()

Squared chord distance (lowlevel function)

squared_euclidean()

Squared euclidean distance (lowlevel function)

taneja()

Taneja difference (lowlevel function)

tanimoto()

Tanimoto distance (lowlevel function)

topsoe()

Topsoe distance (lowlevel function)

wave_hedges()

Wave hedges distance (lowlevel function)

Other

binned.kernel.est()

Kernel Density Estimation

lin.cor()

Linear Correlation