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Perform Permutation Tests Under Different Transformations

Source: R/tf_stability.R
tf_stability.Rd

tf_stability statistically evaluates the stability of phylotranscriptomics permutation tests (e.g., stat_flatline_test, stat_reductive_hourglass_test, etc.) under different data transformations using a PhyloExpressionSet.

Usage

tf_stability(
  phyex_set,
  conservation_test = stat_flatline_test,
  transforms = COUNT_TRANSFORMS
)

Arguments

phyex_set

a PhyloExpressionSet.

conservation_test

a conservation test function (e.g. stat_flatline_test, stat_reductive_hourglass_test, etc.)

transforms

named list of transformation functions (default: COUNT_TRANSFORMS)

Value

Named numeric vector of p-values for each transformation.

Details

Assesses the stability of data transforms on the permutation test of choice. See tf, stat_flatline_test, stat_reductive_hourglass_test, etc.

References

Lotharukpong JS et al. (2023) (unpublished)

Author

Jaruwatana Sodai Lotharukpong