All functions

ActivityParams()

Create ActivityParams object

BurstParams()

Create BurstParams object

FamilyParams()

Create FamilyParams object

MutationParams()

Create MutationParams object

OutputParams()

Create OutputParams object

RecombParams()

Create RecombParams object

SeedParams()

Create SeedParams object

SelectionParams()

Create SelectionParams object

SequenceParams()

Create SequenceParams object

SimulationParams()

Create SimulationParams object

is.ActivityParams()

Is x an ActivityParams object?

is.BurstParams()

Is x a BurstParams object?

is.FamilyParams()

Is x a FamilyParams object?

is.MutationParams()

Is x a MutationParams object?

is.OutputParams()

Is x a OutputParams object?

is.RecombParams()

Is x a RecombParams object?

is.SeedParams()

Is x a SeedParams object?

is.SelectionParams()

Is x a SelectionParams object?

is.SequenceParams()

Is x a SequenceParams object?

is.SimulationParams()

Is x a SimulationParams object?

parseSimulationOutput()

Input data from CPP output into a list of data frames

plotEvolution()

Plotting function wrapper

retrocombinator-package

retrocombinator: Simulating The Evolution of Retrotransposons Over Time

simulateEvolution()

Run an entire simulation with flags