Run an entire simulation with flags
simulateEvolution( sequenceParams = SequenceParams(), activityParams = ActivityParams(), mutationParams = MutationParams(), burstParams = BurstParams(), recombParams = RecombParams(), selectionParams = SelectionParams(), familyParams = FamilyParams(), simulationParams = SimulationParams(), outputParams = OutputParams(), seedParams = SeedParams() )
sequenceParams | A [retrocombinator::SequenceParams()] object for the simulation |
---|---|
activityParams | An [retrocombinator::ActivityParams()] object for the simulation |
mutationParams | A [retrocombinator::MutationParams()] object for the simulation |
burstParams | A [retrocombinator::BurstParams()] object for the simulation |
recombParams | A [retrocombinator::RecombParams()] object for the simulation |
selectionParams | A [retrocombinator::SelectionParams()] object for the simulation |
familyParams | A [retrocombinator::FamilyParams()] object for the simulation |
simulationParams | A [retrocombinator::SimulationParams()] object for the simulation |
outputParams | A [retrocombinator::OutputParams()] object for the simulation |
seedParams | A [retrocombinator::SeedParams()] object for the simulation |
A single character, the filename of the output of the simulation that can then be loaded into R using [retrocombinator::parseSimulationOutput()]
if (FALSE) { simulateEvolution(sequenceParams = mySequenceParams, familyParams = myFamilyParams) }