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Remove Genes from PhyloExpressionSet

Source: R/phyloset_base.R
remove_genes.Rd

Remove specified genes from a PhyloExpressionSet object.

Usage

remove_genes(
  phyex_set,
  genes,
  new_name = paste(phyex_set@name, "perturbed"),
  reuse_null_txis = TRUE
)

Arguments

phyex_set

A PhyloExpressionSet object

genes

Character vector of gene IDs to remove

new_name

Character string for the new dataset name (default: auto-generated)

reuse_null_txis

Logical indicating whether to reuse precomputed null conservation TXIs (default: TRUE)

Value

A PhyloExpressionSet object with the specified genes removed

Examples

# Remove specific genes
filtered_set <- remove_genes(example_phyex_set, example_phyex_set@gene_ids[1:5], 
                            new_name = "Filtered Dataset")