Plot Relative Expression Profiles (Line Plot) — plot_relative_expression

Plots relative expression profiles for age categories using a PhyloExpressionSet S7 object.

Usage

plot_relative_expression_line(
  phyex_set,
  groups,
  modules = NULL,
  adjust_range = TRUE,
  alpha = 0.1,
  ...
)

phyex_set: A PhyloExpressionSet object (BulkPhyloExpressionSet or ScPhyloExpressionSet).
groups: A list of integer vectors specifying age categories (e.g., phylostrata) for each group (1 or 2 groups).
modules: Optional list for shading modules: list(early=..., mid=..., late=...).
adjust_range: Logical, adjust y-axis range for both panels (if 2 groups).
alpha: Transparency for shaded module area.
...: Further arguments passed to ggplot2 geoms.

ggplot2 object or list of ggplot2 objects.