Partial TAI Distribution Plotting Functions — plot_distribution

Functions for plotting and comparing partial TAI distributions using PhyloExpressionSet S7 objects.

plot_distribution_pTAI generates 2 plots that help to compare the distribution of the quotient of expression by partial TAI through various developmental stages or cell types, highlighting each stage with distinct colors.

Usage

plot_distribution_pTAI(
  phyex_set,
  stages = NULL,
  xlab = "Expression / Partial TAI",
  ylab = "Density",
  main = "Density Distribution of Expression / Partial TAI by Developmental Stage"
)

Arguments

phyex_set: A PhyloExpressionSet object (BulkPhyloExpressionSet or ScPhyloExpressionSet).
stages: A numeric vector specifying the indices of the stages to compare. Each index corresponds to a stage in the PhyloExpressionSet. If NULL, all stages are used.
xlab: Label of x-axis.
ylab: Label of y-axis.
main: Figure title.

Author

Filipa Martins Costa