
Plot Phylostratum Contribution to Transcriptomic Index
Source:R/plot_contribution.R
plot_contribution.Rd
Create a stacked area plot showing the contribution of each phylostratum to the overall transcriptomic index across developmental stages or cell types.
Details
This function visualizes how different phylostrata contribute to the overall transcriptomic index pattern across developmental stages (bulk data) or cell types (single-cell data). Each area represents the contribution of a specific phylostratum, with older strata typically shown in darker colors and younger strata in lighter colors.
The plot uses the PS_colours function to create a consistent color scheme that matches other myTAI visualizations.