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Match Single-Cell Expression Data with Phylostratum Map

Source: R/phyloset_sc.R
match_map_sc.Rd

Join single-cell gene expression data (from a Seurat object) with a phylostratum mapping to create a ScPhyloExpressionSet object.

Usage

match_map_sc(seurat, phylomap, layer = "counts", strata_legend = NULL, ...)

Arguments

seurat

A Seurat object containing single-cell expression data

phylomap

A data frame with two columns: phylostratum assignments and gene IDs

layer

Character string specifying which layer to use from the Seurat object (default: "counts")

strata_legend

A data frame with two columns: phylostratum assignments and name of each stratum. If NULL, no labels will be added (default: NULL) If NULL, uses sorted unique values from column 1

...

Additional arguments passed to as_ScPhyloExpressionSet

Value

A ScPhyloExpressionSet object

Examples

# Match Seurat object with phylostratum map
# sc_set <- match_map_sc(seurat_obj, phylo_map, layer = "counts", name = "SC Matched Dataset")