Convert a BulkPhyloExpressionSet object back to the original data frame format
with phylostratum, gene ID, and expression data as columns.
Usage
as_data_frame(phyex_set, use_collapsed = FALSE)
Arguments
- phyex_set
A BulkPhyloExpressionSet object
- use_collapsed
Logical indicating whether to use collapsed expression data (default: FALSE)
Value
A data frame where column 1 contains phylostratum information,
column 2 contains gene IDs, and columns 3+ contain expression data
Examples
# Convert BulkPhyloExpressionSet back to data frame
# df <- as_data_frame(bulk_phyex_set)
# df_collapsed <- as_data_frame(bulk_phyex_set, use_collapsed = TRUE)
