Convert Seurat Object to Single-Cell PhyloExpressionSet

Convert a Seurat object with phylostratum information into a ScPhyloExpressionSet object for single-cell phylotranscriptomic analysis.

Usage

as_ScPhyloExpressionSet(
  seurat,
  strata,
  layer = "counts",
  name = "Single-Cell Phylo Expression Set",
  ...
)

Arguments

seurat

A Seurat object containing single-cell expression data

strata

Factor vector of phylostratum assignments for each gene

layer

Character string specifying which layer to use from the Seurat object (default: "counts")

name

A character string naming the dataset (default: "Single-Cell Phylo Expression Set")

...

Additional arguments passed to ScPhyloExpressionSet constructor

Value

A ScPhyloExpressionSet object

Examples

# Convert Seurat object to ScPhyloExpressionSet
# sc_set <- as_ScPhyloExpressionSet(seurat_obj, phylo_map, "celltype",
#                                  name = "Brain Development SC Dataset")