Conservation Test Result S7 Class

S7 class extending TestResult for conservation-specific test results, including TXI profiles and null distributions.

Usage

ConservationTestResult(
  method_name = stop("@method_name is required"),
  test_stat = stop("@test_stat is required"),
  fitting_dist = stop("@fitting_dist is required"),
  params = stop("@params is required"),
  alternative = "two-sided",
  null_sample = stop("@null_sample is required"),
  data_name = character(0),
  p_label = "p_val",
  test_txi = stop("@test_txi is required"),
  null_txis = stop("@null_txis is required"),
  modules = list()
)

Arguments

method_name

Character string specifying the statistical test method

test_stat

Numeric value of the test statistic

fitting_dist

Character string specifying the fitted distribution

params

Named list of distribution parameters

alternative

Character string specifying the alternative hypothesis

null_sample

Numeric vector of null distribution values

data_name

Character string describing the data

p_label

Character string for p-value label

test_txi

Numeric vector of observed TXI values

null_txis

Matrix of null TXI distributions from permutations

modules

Optional list of developmental modules used in the test

Details

ConservationTestResult extends TestResult with phylotranscriptomic-specific information including the observed TXI profile and null TXI distributions generated by permutation testing.

Examples

# Create a conservation test result (typically done internally)
# result <- ConservationTestResult(method_name = "Test", test_txi = c(1,2,3), ...)