For each gene i, exclude the corresponding gene i from the global
PhyloExpressionSet or DivergenceExpressionSet and compute the TAI
or TDI
profile for the corresponding global PhyloExpressionSet or DivergenceExpressionSet
with excluded gene i.
This procedure results in a TAI or TDI profile Matrix storing the TAI or TDI profile for each omitted gene i.
Usage
omitMatrix(ExpressionSet)
Arguments
- ExpressionSet
a standard PhyloExpressionSet or DivergenceExpressionSet object.
Value
a numeric matrix storing TAI or TDI profile for each omitted gene i.
Examples
# read standard phylotranscriptomics data
data(PhyloExpressionSetExample)
data(DivergenceExpressionSetExample)
# example PhyloExpressionSet
omMatrix_ps <- omitMatrix(PhyloExpressionSetExample)
# example DivergenceExpressionSet
omMatrix_ds <- omitMatrix(DivergenceExpressionSetExample)