Compute TAI or TDI Profiles Omitting a Given Gene

Source: R/omitMatrix.R

For each gene i, exclude the corresponding gene i from the global PhyloExpressionSet or DivergenceExpressionSet and compute the TAI or TDI profile for the corresponding global PhyloExpressionSet or DivergenceExpressionSet with excluded gene i.

This procedure results in a TAI or TDI profile Matrix storing the TAI or TDI profile for each omitted gene i.

omitMatrix(ExpressionSet)

Arguments

ExpressionSet

a standard PhyloExpressionSet or DivergenceExpressionSet object.

Value

a numeric matrix storing TAI or TDI profile for each omitted gene i.

Author

Hajk-Georg Drost

Examples


# read standard phylotranscriptomics data
data(PhyloExpressionSetExample)
data(DivergenceExpressionSetExample)

# example PhyloExpressionSet
omMatrix_ps <- omitMatrix(PhyloExpressionSetExample)

# example DivergenceExpressionSet
omMatrix_ds <- omitMatrix(DivergenceExpressionSetExample)