Plot pairwise dN, dS, or dN/dS distributions of orthologous genes — dnds_across_multiple_species

This function enables users to plot pairwise dN, dS, or dN/dS distributions of orthologous genes.

dnds_across_multiple_species_plot(
  dnds_species_tbl,
  type,
  order,
  xlab = "",
  ylab = "",
  title = ""
)

Arguments

dnds_species_tbl	a dnds table created with `dnds_across_multiple_species`.
type	type of substitution rate quantification that shall be visualized on the y-axis. Options are: `type = "dn"` `type = "ds"` `type = "dn/ds"` `type = "dn+ds"`
order	a character vector specifying the order of the species using their scientific names (which have to match the species names stored in the `subject_species` column of the input `dnds_species_tbl`).
xlab	label of x-axis.
ylab	label of y-axis.
title	title label.

Hajk-Georg Drost