Retrieve core orthologs across multiple species from Orthofinder2 output

Retrieve core orthologs (= single copy orthologs) across multiple species from a Orthofinder2 output.

orthofinder2_retrieve_core_orthologs(orthogroups_file, single_copy_file)

Arguments

orthogroups_file

file path to Orthofinder2 output file named Orthogroups.csv.

single_copy_file

file path to Orthofinder2 output file named SingleCopyOrthogroups.txt.

Author

Hajk-Georg Drost