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Count number of orthologous lncRNAs per pairwise species comparison

Source: R/lnc_map_counts.R
lnc_map_counts.Rd

This function takes a orthologous lncRNA map generated with map_generator_lnc as input and groups the table by species to count the number of orthologous lncRNAs per pairwise species comparison using the reference (query) species specified in map_generator_lnc.

Usage

lnc_map_counts(lnc_map, species_order)

Arguments

lnc_map

a orthologous lncRNA map generated with map_generator_lnc.

species_order

character string specifying species names listed in the order of phylogenetic/taxonomic distance from the query species. The species names must match with the species names present in map_generator_lnc.

Author

Hajk-Georg Drost