Plot pairwise feature distributions of orthologous genes

Source: R/gg_species_feature_blast_tbl.R

This function enables users to plot pairwise feature distributions of orthologous genes.

gg_species_feature_blast_tbl(
  blast_tbl,
  type,
  order,
  xlab = type,
  ylab = "Density",
  title = ""
)

Arguments

blast_tbl

a blast_tbl.

type

type of sustitution rate quantification that shall be visualized on the y-axis. Options are:

  • type = "q_len"

  • type = "qcov"

  • type = "qcovhsp"

  • type = "perc_identity"

  • type = "alig_length"

  • type = "mismatches"

  • type = "gap_openings"

  • type = "n_gaps"

  • type = "evalue"

  • type = "bit_score"

  • type = "score_raw"

order

a character vector specifying the order of the species using their scientific names (which have to match the species names stored in the subject_species column of the input blast_tbl).

xlab

label of x-axis.

ylab

label of y-axis.

title

title label.

Author

Hajk-Georg Drost