Quantification of the repeat space for multiple Repeat Masker files

The repeat space for multiple Repeat Masker files is quantified and stored in one tibble.

meta.seq.space(
  rm.folder,
  type = "rm",
  repeat.type = "all",
  rename = FALSE,
  save.file = TRUE
)

Arguments

rm.folder	file path to the `Repeat Masker` files.
type	type of input data. Option are: `type = "rm"` - `Repeat Masker` files.
repeat.type	type of element for which total repeat space shall be quantified. Options are: `repeat.type = "all"` include all types of repeats. `repeat.type = "ltr"` include only LTR retrotransposons.
rename	logical value indicating whether or not long file names shall be transformed to short scientific names.
save.file	logical value indicating whether or not the result `tibble` shall be stored locally.

Hajk-Georg Drost