Combine LTRpred prediction files

Source: R/combinePreds.R

Given a path to a folder that stores several LTRpred prediction files, this function imports the individual prediction files and combines them to one large LTRpred prediction file.

combinePreds(folder, quality.filter = FALSE, sim = 70, n.orfs = 0)

Arguments

folder

path to folder in which prediction files are stored.
quality.filter

shall false positives be filtered out as much as possible or not.
sim

If quality.filter = TRUE: LTR similarity threshold. Only putative LTR transposons that fulfill this LTR similarity threshold will be retained.
n.orfs

If quality.filter = TRUE: minimum number of ORFs detected in the putative LTR transposon.

Author

Hajk-Georg Drost